Howdy,
This is an important topic with character rigging, so this thread will hopefully help shed some light on it.
When scaling a complete character, you must make sure you're using the Object tool and NOT the Model tool. I know Cinema 4D defaults to the Model tool when you first open it and most of the layouts have the Object tool low in the pallet, but in my opinion the Model tool is not good for character work. I always change my character layout to have the Object tool where it can be easily accessed. It is even bad to use the Model tool when scaling a character rigged with Mocca.
Here is the result of scaling the mime character rigged in Mocca with the Model tool:
Now the thing to remember when using CD Joints & Skin is that anytime you are going to make alterations to the character, you must unbind the skin first and then rebind the skin after the alterations. This also applies to scaling the character.
So, to scale your complete character, follow these steps:
1. First, if you have a CD Bind Pose tag in your rig, select it and in the Attributes Manager under the Set tab, click the button "Clear Bind Pose".
2. Select the CD Skin tags and unbind the skin. If you also have CD Skin Cluster tags added to the rig, you need not worry about unbinding and rebinding them. The CD Skin tag will look to see if there are any CD Skin Clusters in the rig that are affecting the character mesh, and will also bind and unbind them.
3. Select the CD Skin's Reference tab in the AM, and click the Edit Reference button. This is to ensure the reference is also scaled.
4. Select the Object tool, then the Scale tool and then select the topmost parent object in your character and scale it to the size you want.
5. Select the CD Skin tags and in the Attributes Manager under the Reference tab click on the Reset Reference button.
6. Then rebind the skin, by clicking the Bind Skin button in the CD Skin's AM under the Tag tab.
7. And finally, select the CD Bind Pose tag, if you had one in the rig, and click the button Set Bind Pose in the AM under the Set tab.
That should safely scale your character.
Adios,
Cactus Dan